Figure 9: Schematic layout of a GC/MS instrument.
The stationary
phase in Gas Chromatography is commonly a packing of inert, small
diameter particles (such as diatomaceous earth) with a nonpolar liquid
coating them, or just a liquid coating on the inner surface of the
column. This liquid is a very thin layer (0.1 to 5 μm), usually a
polydimethyl siloxane (shown below) where some of the –CH3 groups can be
altered so as to match the polarity of the analytes. A parameter common
in chromatography used for this is called the Partition Coefficient (or
Ratio), K, which is the ratio of the concentration of the analyte in
the stationary phase to that in the mobile phase.
The mobile phase is
an inert gas such as Argon, Helium or Nitrogen that only carries the
analyte molecules through the column. The carrier gas does not interact
with the analyte and column packing material. In this lab, ultrahigh
purity Helium is used as carrier gas.
The retention time (time it
takes to pass through the column) for an analyte is based on the time
spent in the stationary phase vs. the mobile phase, with longer
retention times for analytes with polarities closer to that of the
stationary phase. In the sample chromatogram shown in Fig. 2, two
different molecules have distinct retention times, t1 and t2. Dead time,
t0, is the time it takes for the carrier gas to go through the column.
The
analyte peaks tend to broaden as they pass along the column, resembling
Gaussian peaks. This is due to the random motions of molecules as they
migrate down a column, passing in and out of the stationary phase. This
peak broadening affects the efficiency of the column as well as its
ability to distinctly separate the peaks of two different analytes (the
resolution). Another common parameter used in chromatography is the
Selectivity Factor, which is the ratio
of the migration rates between
two different analytes, A and B, and provides a measure of how well the
column separates A from B.Molecules 1 and 2 are well separated in spite
of the substantial peak broadening.
In order to optimize the column
resolution and efficiency, one can change the column dimensions and/or
the stationary phase. However, altering the temperature has the greatest
effect on column resolution and efficiency. Gradually increasing the
temperature, manually or in a predetermined software program, can
greatly increase scan speeds as well as increase resolution between
peaks.
Samples are commonly injected in very small volumes through a
septum or diaphragm into the column head to prevent evaporation of the
sample. If the sample is a liquid, then it must be vaporized before
being sent into the column. The chromatogram can be used for qualitative
and quantitative analysis, but a better method is to direct the output
of the chromatographic column into a mass spectrometer (or other
identification method) which can then analyze each analyte as it elutes
off the column.
Mass Spectrometry
Mass Spectrometry refers to a
group of analytical techniques that precisely measure masses of
molecules, atoms and/or ions. Because each species is characterized by a
unique mass, mass spectrometry is the most common identification
technique used by chemists, biologists, forensic scientists, etc. There
are many different types of mass spectrometry based on the various
sections of the instrument and the application desired. In most
approaches, vaporized samples are ionized (and commonly fragmented), and
these ions are separated based on their mass to charge ratios (m/z) and
then detected and processed.
1) Sample Injection: There are many
different methods used to inject a sample into a mass spectrometer
depending on the original phase of the sample. The main requirement is
that the sample is converted into the gas phase at very low pressures
(down to 10–10 atm) for the instrument to function properly. In this
lab, the sample will be injected as a liquid with a syringe. The
injected liquid will then be heated to convert it into a vapor.
2)
Ionization: Of the numerous ways to ionize the sample, electron impact
is the most commonly used. There are several methods that combine
vaporization and ionization in one step, especially for solid samples.
In electron impact ionization, a filament is used to